Poster Presentation 50 Years Shine-Dalgarno Symposium 2023

Nonsense-mediated decay machinery in Plasmodium falciparum is inefficient and non-essential (#146)

Emma McHugh 1 , Michaela Bulloch 1 , Cameron Patrick 1 , Stuart Ralph 1
  1. University of Melbourne, Parkville, VIC, Australia

Nonsense-mediated decay (NMD) is a conserved mRNA quality control process that eliminates transcripts bearing a premature termination codon. In addition to its role in removing erroneous transcripts, NMD is involved in post-transcriptional regulation of gene expression via programmed intron retention in metazoans. The apicomplexan parasite Plasmodium falciparum shows relatively high levels of intron retention, but it is unclear whether these variant transcripts are functional targets of NMD. In this study, we use CRISPR-Cas9 to disrupt and epitope-tag the P. falciparum orthologues of two core NMD components: PfUPF1 (PF3D7_1005500) and PfUPF2 (PF3D7_0925800). We localise both PfUPF1 and PfUPF2 to puncta within the parasite cytoplasm and show that these proteins interact with each other, and with other mRNA-binding proteins. Using RNA-seq, we find that although these core NMD orthologues are expressed and interact in P. falciparum, they are not required for degradation of nonsense transcripts. Furthermore, our work suggests that the majority of intron retention in P. falciparum has no functional role and that NMD is not required for parasite growth ex vivo.